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blaster - Native R Implementation of an Efficient BLAST-Like Algorithm
Implementation of an efficient BLAST-like sequence comparison algorithm, written in 'C++11' and using native R datatypes. Blaster is based on 'nsearch' - Schmid et al (2018) <doi:10.1101/399782>.
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cpp
4.92 score 14 stars 2 dependents 2 scripts 654 downloadsprider - Multiplexed Primer Design by Linear Set Coverage Approximation
Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.
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cpp
3.85 score 7 stars 451 downloads