Package: prider 1.0.6

Manu Tamminen

prider: Multiplexed Primer Design by Linear Set Coverage Approximation

Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.

Authors:Manu Tamminen [aut, cre], Niina Smolander [aut]

prider_1.0.6.tar.gz
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prider_1.0.6.tar.gz(r-4.7-arm64)prider_1.0.6.tar.gz(r-4.7-x86_64)prider_1.0.6.tar.gz(r-4.6-arm64)prider_1.0.6.tar.gz(r-4.6-x86_64)
prider_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
prider/json (API)

# Install 'prider' in R:

install.packages('prider', repos = c('https://tamminenlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tamminenlab/prider/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

cpp

3.85 score 7 stars 451 downloads 4 exports 26 dependencies

Last updated from:642988b495. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	123
linux-devel-x86_64	OK	120
source / vignettes	OK	186
linux-release-arm64	OK	131
linux-release-x86_64	OK	132
macos-release-arm64	OK	123
macos-release-x86_64	OK	181
macos-oldrel-arm64	OK	121
macos-oldrel-x86_64	OK	210
windows-devel	OK	101
windows-release	OK	130
windows-oldrel	OK	183
wasm-release	OK	101

Exports:chunker prider primers sequences

Dependencies:bitops caTools cli cpp11 dplyr generics glue gplots gtools KernSmooth lifecycle magrittr pillar pkgconfig purrr R6 Rcpp rlang stringi stringr tibble tidyr tidyselect utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
chunker	chunker
new_prider	new_prider
new_primers	new_primers
new_sequences	new_sequences
Prepare a primer table for downstream analyses	prepare_primer_df
Prider	prider-package plot.prider prider print.prider
primers	primers primers.default primers.prider print.primers [.primers
sequences	print.sequences sequences sequences.default sequences.prider [.sequences