Package: prider 1.0.6

Manu Tamminen

prider: Multiplexed Primer Design by Linear Set Coverage Approximation

Implementation of an oligonucleotide primer and probe design algorithm using a linearly scaling approximation of set coverage. A detailed description available at Smolander and Tamminen, 2021; <doi:10.1101/2021.09.06.459073>.

Authors:Manu Tamminen [aut, cre], Niina Smolander [aut]

prider_1.0.6.tar.gz
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prider_1.0.6.tgz(r-4.6-x86_64)prider_1.0.6.tgz(r-4.6-arm64)prider_1.0.6.tgz(r-4.5-x86_64)prider_1.0.6.tgz(r-4.5-arm64)
prider_1.0.6.tar.gz(r-4.7-arm64)prider_1.0.6.tar.gz(r-4.7-x86_64)prider_1.0.6.tar.gz(r-4.6-arm64)prider_1.0.6.tar.gz(r-4.6-x86_64)
prider_1.0.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
prider/json (API)

# Install 'prider' in R:

install.packages('prider', repos = c('https://tamminenlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tamminenlab/prider/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

cpp

3.85 score 7 stars 6 scripts 367 downloads 4 exports 26 dependencies

Last updated from:642988b495. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	93
linux-devel-x86_64	OK	119
source / vignettes	OK	173
linux-release-arm64	OK	122
linux-release-x86_64	OK	110
macos-release-arm64	OK	119
macos-release-x86_64	OK	293
macos-oldrel-arm64	OK	125
macos-oldrel-x86_64	OK	234
windows-devel-arm64	OK	209
windows-devel-x86_64	OK	215
windows-release-arm64	OK	197
windows-release-x86_64	OK	95
windows-oldrel-x86_64	OK	111
wasm-release	OK	105

Exports:chunker prider primers sequences

Dependencies:bitops caTools cli cpp11 dplyr generics glue gplots gtools KernSmooth lifecycle magrittr pillar pkgconfig purrr R6 Rcpp rlang stringi stringr tibble tidyr tidyselect utf8 vctrs withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
chunker	chunker
new_prider	new_prider
new_primers	new_primers
new_sequences	new_sequences
Prepare a primer table for downstream analyses	prepare_primer_df
Prider	prider-package plot.prider prider print.prider
primers	primers primers.default primers.prider print.primers [.primers
sequences	print.sequences sequences sequences.default sequences.prider [.sequences